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189 results found

Cell lineage analysis in human brain using endogenous retroelements

Publication: Journal Article

Evrony*, Gilad, Eunjung Alice Lee*, Bhaven Mehta, Yuval Benjamini, Robert Johnson, Xuyu Cai, Lixing Yang, et al. 2015. “Cell Lineage Analysis in Human Brain Using Endogenous Retroelements”. Neuron 85 (1): 49-59.

Landscape of somatic retrotransposition in human cancers

Publication: Journal Article

Lee, Eunjung Alice, Rebecca Iskow, Lixing Yang, Omer Gokcumen, Psalm Haseley, L. J. Luquette, Jens Lohr, et al. 2012. “Landscape of Somatic Retrotransposition in Human Cancers”. Science 337 (6097): 967-71.

Prediction of extracellular matrix proteins based on distinctive sequence and domain characteristics

Publication: Journal Article

Jung, Juhyun, Taewoo Ryu, Yongdeuk Hwang, Eunjung Lee, and Doheon Lee. 2010. “Prediction of Extracellular Matrix Proteins Based on Distinctive Sequence and Domain Characteristics”. J Comput Biol 17 (1): 97-105.

Analysis of AML genes in dysregulated molecular networks

Publication: Journal Article

Lee, Eunjung, Hyunchul Jung, Predrag Radivojac, Jong-Won Kim, and Doheon Lee. 2009. “Analysis of AML Genes in Dysregulated Molecular Networks”. BMC Bioinformatics 10 Suppl 9: S2.

Inferring pathway activity toward precise disease classification

Publication: Journal Article

Lee*, Eunjung Alice, Han-Yu Chuang*, Jong-Won Kim, Trey Ideker**, and Doheon Lee**. 2008. “Inferring Pathway Activity Toward Precise Disease Classification”. PLoS Comput Biol 4 (11): e1000217.

Pan-cancer analysis of whole genomes identifies driver rearrangements promoted by LINE-1 retrotransposition

Publication: Journal Article

Rodriguez-Martin, Bernardo, Eva Alvarez, Adrian Baez-Ortega, . , Eunjung Alice Lee, . , PCAWG-Structural-Variation-Working-Group, Peter Campbell, Jose Tubio, and PCAWG-Consortium. 2020. “Pan-Cancer Analysis of Whole Genomes Identifies Driver Rearrangements Promoted by LINE-1 Retrotransposition”. Nat Genet 52 (3): 306-19.

Parallel RNA and DNA analysis after deep sequencing (PRDD-seq) reveals cell type-specific lineage patterns in human brain

Publication: Journal Article

Huang*, August Yue, Pengpeng Li*, Rachel Rodin, Sonia Kim, Yanmei Dou, Connor Kenny, Shyam Akula, et al. 2020. “Parallel RNA and DNA Analysis After Deep Sequencing (PRDD-Seq) Reveals Cell Type-Specific Lineage Patterns in Human Brain”. Proc Natl Acad Sci U S A 117 (25): 13886-95.

APP gene copy number changes reflect exogenous contamination

Publication: Journal Article

Kim, Junho, Boxun Zhao, August Yue Huang, Michael B. Miller, Michael A. Lodato, Christopher A. Walsh**, and Eunjung Alice Lee**. 2020. “APP Gene Copy Number Changes Reflect Exogenous Contamination”. Nature 584: E20–E28.

Prevalence and mechanisms of somatic deletions in single human neurons during normal aging and in DNA repair disorders

Publication: Journal Article

Kim, Junho, AY Huang, Shelby L. Johnson, Lai, Laura Isacco, Alisa M. Jeffries, Michael B. Miller, Michael A. Lodato, Chris A. Walsh**, and Eunjung Alice Lee**. 2022. “Prevalence and Mechanisms of Somatic Deletions in Single Human Neurons During Normal Aging and in DNA Repair Disorders”. Nature Communications 13 (5918).

Congratulations to Brian for his admission to Harvard College!

News: December 13, 2018

Brian Wee, our beloved high school intern (Summer 2018) from Colorado, just received a letter of admission to Harvard college. Many congratulations to Brian! We all know that you will do great there and hope we will see you more often in Boston!