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Reproducibility of brain MRI segmentation algorithms: Empirical comparison of local MAP PSTAPLE, FreeSurfer, and FSL-FIRST

Publication: Journal Article

Velasco-Annis, Clemente, Alireza Akhondi-Asl, Aymeric Stamm, and Simon Warfield. 2018. “Reproducibility of Brain MRI Segmentation Algorithms: Empirical Comparison of Local MAP PSTAPLE, FreeSurfer, and FSL-FIRST”. Journal of Neuroimaging 28 (2): 162–172.

T2-relaxometry for Myelin Water Fraction Estimation using a Mixture of Wald Distributions

Publication: Conference Paper

Akhondi-Asl, Alireza, Onur Afacan, Robert Mulkern, and Simon Warfield. 2014. “T2-Relaxometry for Myelin Water Fraction Estimation Using a Mixture of Wald Distributions”. In Proc. Intl. Soc. Mag. Reson. Med, 22:3146.

P0369/\# 2094: EARLY LACTATE RECOVERY IN PEDIATRIC CRITICAL ILLNESS TREATED WITH ECMO: MODELLING STUDY OF KINETICS

Publication: Journal Article

Au, Akhondi-Asl, Vonberg, Larovere, and Tasker. 2021. “P0369/\# 2094: EARLY LACTATE RECOVERY IN PEDIATRIC CRITICAL ILLNESS TREATED WITH ECMO: MODELLING STUDY OF KINETICS”. Pediatric Critical Care Medicine 22 (Supplement 1 3S): 194.

Implementation of an Analgesia-Sedation Protocol Is Associated With Reduction in Midazolam Usage in the PICU.

Publication: Journal Article

Yang, Youyang, Alireza Akhondi-Asl, Alon Geva, Danielle Dwyer, Carolyn Stickney, Monica Kleinman, Kate Madden, Amy Sanderson, and Nilesh Mehta. 2021. “Implementation of an Analgesia-Sedation Protocol Is Associated With Reduction in Midazolam Usage in the PICU.”. Pediatric Critical Care Medicine: A Journal of the Society of Critical Care Medicine and the World Federation of Pediatric Intensive and Critical Care Societies.

Estimating a reference standard segmentation with spatially varying performance parameters: Local MAP STAPLE

Publication: Journal Article

Commowick, Olivier, Alireza Akhondi-Asl, and Simon Warfield. 2012. “Estimating a Reference Standard Segmentation With Spatially Varying Performance Parameters: Local MAP STAPLE”. IEEE Transactions on Medical Imaging 31 (8): 1593–1606.

Automatic Detection of Synaptic Partners in a Whole-Brain Drosophila EM Dataset.

Publication: Journal Article

Buhmann, Julia, Arlo Sheridan, Stephan Gerhard, Renate Krause, Tri Nguyen, Larissa Heinrich, Philipp Schlegel, et al. 2021. “Automatic Detection of Synaptic Partners in a Whole-Brain Drosophila EM Dataset.”. Nature Methods, no. 18: 711-74.

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Core Directors: Rachel Wilson rachel_wilson@hms.harvard.edu Wei-Chung Allen Lee wei-chung_lee@hms.harvard.edu

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Dr. Rubul Mout is a Fellow (Research) at Harvard Medical School, Harvard University, and at the Stem Cell Program, Boston Children’s Hospital (BCH). Born, brought up, and educated in India, Dr. Mout moved to the United States to pursue his PhD from the University of Massachusetts, Amherst. Prior to...

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