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Akhondi-Asl, Alireza, Arne Hans, Benoit Scherrer, Jurriaan Peters, and Simon Warfield. 2012. “Whole Brain Group Network Analysis Using Network Bias and Variance Parameters”. In 2012 9th IEEE International Symposium on Biomedical Imaging (ISBI), 1511–1514. IEEE.

Fernandez, Ivan Sanchez, Alireza Akhondi-Asl, Jacquelyn Klehm, Simon Warfield, Jurriaan Peters, and Tobias Loddenkemper. 2014. “Patients With Electrical Status Epilepticus in Sleep and Normal Magnetic Resonance Imaging Have Smaller Thalamic Volume Than Controls (P7. 332).”

Gholipour, Ali, Catherine Limperopoulos, Sean Clancy, Cedric Clouchoux, Alireza Akhondi-Asl, Judy Estroff, and Simon Warfield. 2014. “Construction of a Deformable Spatiotemporal MRI Atlas of the Fetal Brain: Evaluation of Similarity Metrics and Deformation Models”. In International Conference on Medical Image Computing and Computer-Assisted Intervention, 292–299. Springer, Cham.

Fernandez, Ivan Sanchez, Jurriaan Peters, Alireza Akhondi-Asl, Jacquelyn Klehm, Simon Warfield, and Tobias Loddenkemper. 2017. “Reduced Thalamic Volume in Patients With Electrical Status Epilepticus in Sleep”. Epilepsy Research 130: 74–80.

Lupieri, Adrien, Yasufumi Nagata, Livia Passos, Dakota Beker-Greene, Katherine Kirkwood, Jill Wylie-Sears, Zahra Alvandi, et al. 2021. “Integration of Functional Imaging, Cytometry, and Unbiased Proteomics Reveals New Features of Endothelial-to-Mesenchymal Transition in Ischemic Mitral Valve Regurgitation in Human Patients”. Front Cardiovasc Med 8: 688396.

Coll-Font, Jaume, Onur Afacan, Scott Hoge, Harsha Garg, Kumar Shashi, Bahram Marami, Ali Gholipour, Jeanne Chow, Simon Warfield, and Sila Kurugol. 2020. “Retrospective Distortion and Motion Correction for Free-Breathing DW-MRI of the Kidneys Using Dual-Echo EPI and Slice-to-Volume Registration”. Journal of Magnetic Resonance Imaging.

Phelps, Jasper S., David Grant Colburn Hildebrand, Brett J. Graham, Aaron T. Kuan, Logan A. Thomas, Tri Nguyen, Julia Buhmann, et al. 2021. “Reconstruction of Motor Control Circuits in Adult Drosophila Using Automated Transmission Electron Microscopy”. Cell 184 (3): 759–774.

Cheadle, Lucas, Samuel A. Rivera, Jasper S. Phelps, Katelin A. Ennis, Beth Stevens, Linda C. Burkly, Wei-Chung Allen Lee, and Michael E. Greenberg. 2020. “Sensory Experience Engages Microglia to Shape Neural Connectivity through a Non-Phagocytic Mechanism”. Neuron 108 (3): 451-468.E9.

Zhang, Qiyu, Wei-Chung Lee, David Paul, and David Ginty. 2019. “Multiplexed Peroxidase-Based Electron Microscopy Labeling Enables Simultaneous Visualization of Multiple Cell Types.”. Nat Neurosci 22: 828–839.

Hildebrand, David Grant Colburn, Marcelo Cicconet, Russel Miguel Torres, Woohyuk Choi, Tran Minh Quan, Jungmin Moon, Arthur Willis Wetzel, et al. 2017. “Whole-Brain Serial-Section Electron Microscopy in Larval Zebrafish.”. Nature 545: 345–349.