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SCIG: Machine learning uncovers cell identity genes in single cells by genetic sequence codes

Publication: Journal Article

Arulsamy, Kulandaisamy, Bo Xia, Yang Yu, Hong Chen, William T. Pu, Lili Zhang, and Kaifu Chen. 2025. “SCIG: Machine Learning Uncovers Cell Identity Genes in Single Cells by Genetic Sequence Codes”. Nucleic Acids Research 53 (10): gkaf431.

Abstract accepted in WiML@NeurIPS 2024

News: December 10, 2024

Georgia Tech. Biomedical STAR-AI

News: April 10, 2024

Arnaz Maryam Tariq

Person:

Arnaz is a wet-lab research assistant originally from Bangladesh. She graduated from the University of Southern Mississippi in May 2025 with a BS in Biological Sciences (Microbiology) and a minor in Chemistry. Her honors thesis focused on the transcriptional analysis of inflammatory responses of...

June 2025 Publications by DON Faculty

Page

Development and External Validation of a Genetic Risk Score for Pain in Rheumatoid Arthritis. McMenamin KJ, Riley TR 4th, Wipfler K, Michaud K, Wheeler A, England BR, Sauer B, Wysham KD, Xiao R, March M, Cannon GW, Toikumo S, Kranzler HR, Kember RL, Mikuls TR, Baker JF. Arthritis Care Res (Hoboken)...

Rewriting the Code Spotlight

News: August 08, 2024

Guanlan (Lan) Dong, PhD

Person: PhD Student, Bioinformatics and Integrative Genomics (BIG) (2019.09-2025.07)

Lan is a PhD student in the Bioinformatics and Integrative Genomics (BIG) program at Harvard University. She graduated from Washington University in St. Louis in 2019 with a degree in Mathematics and Computer Science. She is interested in studying the role of somatic mutations in aging and diseased...

MEBOCOST maps metabolite-mediated intercellular communications using single-cell RNA-seq

Publication: Journal Article

Zheng, Rongbin, Yang Zhang, Tadataka Tsuji, Xinlei Gao, Farnaz Shamsi, Allon Wagner, Nir Yosef, et al. 2024. “MEBOCOST Maps Metabolite-Mediated Intercellular Communications Using Single-Cell RNA-Seq”. Nucleic Acids Research 53 (12): gkaf569.