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Akhondi-Asl, Alireza, and Simon Warfield. 2011. “Cortical Brain Structures Segmentation Using Constrained Optimization and Intensity Coupling”. In Biomedical Imaging: From Nano to Macro, 2011 IEEE International Symposium on, 2022–2025. IEEE.

Akhondi-Asl, Alireza, and Simon Warfield. 2011. “A Tutorial Introduction to STAPLE”. Crl. Med. Harvard. Edu.

Bahmanbijari, Payam, Akhondi-Asl, and Hamid Soltanian-Zadeh. 2006. “Interactive Coupled Object Segmentation Using Symmetry and Distance Constraints”. In the Proceedings of the Third Cairo International Biomedical Engineering Conference (CIBEC’06), 21–24.

Gholipour, Ali, Catherine Limperopoulos, Sean Clancy, Cedric Clouchoux, Alireza Akhondi-Asl, Judy Estroff, and Simon Warfield. 2014. “Construction of a Deformable Spatiotemporal MRI Atlas of the Fetal Brain: Evaluation of Similarity Metrics and Deformation Models”. In International Conference on Medical Image Computing and Computer-Assisted Intervention, 292–299. Springer, Cham.

Siversson, Carl, Alireza Akhondi-Asl, Sarah Bixby, Kim, and Simon Warfield. 2014. “Three-Dimensional Hip Cartilage Quality Assessment of Morphology and DGEMRIC by Planar Maps and Automated Segmentation”. Osteoarthritis and Cartilage 22 (10): 1511–1515.

Rollins, Caitlin, Lisa Asaro, Alireza Akhondi-Asl, Barry Kussman, Michael Rivkin, David Bellinger, Simon Warfield, David Wypij, Jane Newburger, and Janet Soul. 2017. “White Matter Volume Predicts Language Development in Congenital Heart Disease”. The Journal of Pediatrics 181: 42–48.

Fernandez, Ivan Sanchez, Jurriaan Peters, Alireza Akhondi-Asl, Jacquelyn Klehm, Simon Warfield, and Tobias Loddenkemper. 2017. “Reduced Thalamic Volume in Patients With Electrical Status Epilepticus in Sleep”. Epilepsy Research 130: 74–80.

Velasco-Annis, Clemente, Alireza Akhondi-Asl, Aymeric Stamm, and Simon Warfield. 2017. “Reproducibility of Brain MRI Segmentation Algorithms: Empirical Comparison of Local MAP PSTAPLE, FreeSurfer, and FSL-FIRST”. Journal of Neuroimaging.

Jugder, Bat-Erdene, Haluk Ertan, Susanne Bohl, Matthew Lee, Christopher Marquis, and Michael Manefield. 2016. “Organohalide Respiring Bacteria and Reductive Dehalogenases: Key Tools in Organohalide Bioremediation”. Frontiers in Microbiology 7 (249).

Jugder, Bat-Erdene, Zhiliang Chen, Darren Tan Tek Ping, Helene Lebhar, Jeffrey Welch, and Christopher Marquis. 2015. “An Analysis of the Changes in Soluble Hydrogenase and Global Gene Expression in Cupriavidus Necator (Ralstonia Eutropha) H16 Grown in Heterotrophic Diauxic Batch Culture”. Microbial Cell Factories 14 (1): 42.