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Jugder, Bat-Erdene, Layla Kamareddine, and Paula Watnick. 2021. “Microbiota-Derived Acetate Activates Intestinal Innate Immunity via the Tip60 Histoneacetyl Transferase Complex”. Immunity.

Commowick, Olivier, Alireza Akhondi-Asl, and Simon Warfield. 2012. “Estimating a Reference Standard Segmentation With Spatially Varying Performance Parameters: Local MAP STAPLE”. IEEE Transactions on Medical Imaging 31 (8): 1593–1606.

Kurugol, Sila, Catherine Seager, Hatim Thaker, Jaume Coll-Font, Onur Afacan, Reid Nichols, Simon Warfield, Richard Lee, and Jeanne Chow. 2020. “Feed and Wrap Magnetic Resonance Urography Provides Anatomic and Functional Imaging in Infants Without Anesthesia”. Journal of Pediatric Urology 16 (1): 116–120.

Buhmann, Julia, Arlo Sheridan, Stephan Gerhard, Renate Krause, Tri Nguyen, Larissa Heinrich, Philipp Schlegel, et al. 2021. “Automatic Detection of Synaptic Partners in a Whole-Brain Drosophila EM Dataset.”. Nature Methods, no. 18: 711-74.

Villarini, Barbara, Hykoush Asaturyan, Sila Kurugol, Onur Afacan, Jimmy Bell, and Louise Thomas. 2021. “3D Deep Learning for Anatomical Structure Segmentation in Multiple Imaging Modalities”. In 2021 IEEE 34th International Symposium on Computer-Based Medical Systems (CBMS), 166–171. IEEE.

Schmaranzer, Florian, Onur Afacan, Till Lerch, Young-Jo Kim, Klaus Siebenrock, Michael Ith, Jennifer Cullmann, et al. 2021. “Magnetization-Prepared 2 Rapid Gradient-Echo MRI for B1 Insensitive 3D T1 Mapping of Hip Cartilage: An Experimental and Clinical Validation”. Radiology 299 (1): 150–158.

Cha, Boksik, Yen-Chun Ho, Xin Geng, Md Riaj Mahamud, Lijuan Chen, Yeunhee Kim, Dongwon Choi, et al. 2020. “YAP and TAZ Maintain PROX1 Expression in the Developing Lymphatic and Lymphovenous Valves in Response to VEGF-C Signaling”. Development 147 (23).

Cha, Boksik, Xin Geng, Md Riaj Mahamud, Jianxin Fu, Anish Mukherjee, Yeunhee Kim, Eek-Hoon Jho, et al. 2016. “Mechanotransduction Activates Canonical Wnt β-Catenin Signaling to Promote Lymphatic Vascular Patterning and the Development of Lymphatic and Lymphovenous Valves”. Genes Dev 30 (12): 1454-69.

Messa, Mirko, Rubén Fernández-Busnadiego, Elizabeth Wen Sun, Hong Chen, Heather Czapla, Kristie Wrasman, Yumei Wu, et al. 2014. “Epsin Deficiency Impairs Endocytosis by Stalling the Actin-Dependent Invagination of Endocytic Clathrin-Coated Pits”. Elife 3: e03311.

Koçanaoğulları, Aziz, Cemre Ariyurek, Onur Afacan, and Sila Kurugol. 2022. “Learning the Regularization in DCE-MR Image Reconstruction for Functional Imaging of Kidneys”. IEEE Access.