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Reproducibility of brain MRI segmentation algorithms: Empirical comparison of local MAP PSTAPLE, FreeSurfer, and FSL-FIRST

Publication: Journal Article

Velasco-Annis, Clemente, Alireza Akhondi-Asl, Aymeric Stamm, and Simon Warfield. 2018. “Reproducibility of Brain MRI Segmentation Algorithms: Empirical Comparison of Local MAP PSTAPLE, FreeSurfer, and FSL-FIRST”. Journal of Neuroimaging 28 (2): 162–172.

Publication: Conference Paper

Akhondi-Asl, Alireza, Onur Afacan, Robert Mulkern, and Simon Warfield. 2014. “T2-Relaxometry for Myelin Water Fraction Estimation Using a Mixture of Wald Distributions”. In Proc. Intl. Soc. Mag. Reson. Med, 22:3146.

Publication: Journal Article

Au, Akhondi-Asl, Vonberg, Larovere, and Tasker. 2021. “P0369/\# 2094: EARLY LACTATE RECOVERY IN PEDIATRIC CRITICAL ILLNESS TREATED WITH ECMO: MODELLING STUDY OF KINETICS”. Pediatric Critical Care Medicine 22 (Supplement 1 3S): 194.

Publication: Journal Article

Yang, Youyang, Alireza Akhondi-Asl, Alon Geva, Danielle Dwyer, Carolyn Stickney, Monica Kleinman, Kate Madden, Amy Sanderson, and Nilesh Mehta. 2021. “Implementation of an Analgesia-Sedation Protocol Is Associated With Reduction in Midazolam Usage in the PICU.”. Pediatric Critical Care Medicine: A Journal of the Society of Critical Care Medicine and the World Federation of Pediatric Intensive and Critical Care Societies.

Publication: Journal Article

Commowick, Olivier, Alireza Akhondi-Asl, and Simon Warfield. 2012. “Estimating a Reference Standard Segmentation With Spatially Varying Performance Parameters: Local MAP STAPLE”. IEEE Transactions on Medical Imaging 31 (8): 1593–1606.

Publication: Journal Article

Gholipour, Ali, Alireza Akhondi-Asl, Judy Estroff, and Simon Warfield. 2012. “Multi-Atlas Multi-Shape Segmentation of Fetal Brain MRI for Volumetric and Morphometric Analysis of Ventriculomegaly”. NeuroImage 60 (3): 1819–1831.

Publication: Journal Article

Commowick, Olivier, Alireza Akhondi-Asl, and Simon Warfield. 2012. “Estimating a Reference Standard Segmentation With Spatially Varying Performance Parameters: Local MAP STAPLE”. IEEE Transactions on Medical Imaging 31 (8): 1593–1606.

Publication: Conference Paper

Akhondi-Asl, Alireza, and Simon Warfield. 2012. “Estimation of the Prior Distribution of Ground Truth in the STAPLE Algorithm: An Empirical Bayesian Approach”. In International Conference on Medical Image Computing and Computer-Assisted Intervention, 593–600. Springer, Berlin, Heidelberg.