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Akhoundi-Asl, Alireza, and Hamid Soltanian-Zadeh. 2007. “Nonparametric Entropy-Based Coupled Multi-Shape Medical Image Segmentation”. In Biomedical Imaging: From Nano to Macro, 2007. ISBI 2007. 4th IEEE International Symposium on, 1200–1203. IEEE.

Hamidian, Hajar, Hamid Soltanian-Zadeh, Alireza Akhondi-Asl, and Reza Faraji-Dana. 2009. “Comparison of Linear and Nonlinear Models for Estimating Brain Deformation Using Finite Element Method”. Advances in Computer Science and Engineering, 340–347.

Akhondi-Asl, Alireza, and Simon Warfield. 2011. “Cortical Brain Structures Segmentation Using Constrained Optimization and Intensity Coupling”. In Biomedical Imaging: From Nano to Macro, 2011 IEEE International Symposium on, 2022–2025. IEEE.

Akhondi-Asl, Alireza, and Simon Warfield. 2011. “A Tutorial Introduction to STAPLE”. Crl. Med. Harvard. Edu.

Bahmanbijari, Payam, Akhondi-Asl, and Hamid Soltanian-Zadeh. 2006. “Interactive Coupled Object Segmentation Using Symmetry and Distance Constraints”. In the Proceedings of the Third Cairo International Biomedical Engineering Conference (CIBEC’06), 21–24.

Gholipour, Ali, Catherine Limperopoulos, Sean Clancy, Cedric Clouchoux, Alireza Akhondi-Asl, Judy Estroff, and Simon Warfield. 2014. “Construction of a Deformable Spatiotemporal MRI Atlas of the Fetal Brain: Evaluation of Similarity Metrics and Deformation Models”. In International Conference on Medical Image Computing and Computer-Assisted Intervention, 292–299. Springer, Cham.

Siversson, Carl, Alireza Akhondi-Asl, Sarah Bixby, Kim, and Simon Warfield. 2014. “Three-Dimensional Hip Cartilage Quality Assessment of Morphology and DGEMRIC by Planar Maps and Automated Segmentation”. Osteoarthritis and Cartilage 22 (10): 1511–1515.

Rollins, Caitlin, Lisa Asaro, Alireza Akhondi-Asl, Barry Kussman, Michael Rivkin, David Bellinger, Simon Warfield, David Wypij, Jane Newburger, and Janet Soul. 2017. “White Matter Volume Predicts Language Development in Congenital Heart Disease”. The Journal of Pediatrics 181: 42–48.

Fernandez, Ivan Sanchez, Jurriaan Peters, Alireza Akhondi-Asl, Jacquelyn Klehm, Simon Warfield, and Tobias Loddenkemper. 2017. “Reduced Thalamic Volume in Patients With Electrical Status Epilepticus in Sleep”. Epilepsy Research 130: 74–80.

Velasco-Annis, Clemente, Alireza Akhondi-Asl, Aymeric Stamm, and Simon Warfield. 2017. “Reproducibility of Brain MRI Segmentation Algorithms: Empirical Comparison of Local MAP PSTAPLE, FreeSurfer, and FSL-FIRST”. Journal of Neuroimaging.