Search

NGSCheckMate: software for validating sample identity in next-generation sequencing studies within and across data types

Publication: Journal Article

Lee*, Sejoon, Soohyun Lee*, Woong-Yang Park, Eunjung Alice Lee**, and Peter J. Park**. 2017. “NGSCheckMate: Software for Validating Sample Identity in Next-Generation Sequencing Studies Within and across Data Types”. Nucleic Acids Research 45 (11): e103.

Publication: Journal Article

Yu, Vionnie, Rushdia Yusuf, Toshihiko Oki, Juwell Wu, Borja Saez, Xin Wang, Colleen Cook, et al. 2016. “Epigenetic Memory Underlies Cell-Autonomous Heterogeneous Behavior of Hematopoietic Stem Cells”. Cell 167 (5): 1310-1322.e17.

Publication: Journal Article

Evrony*, Gilad, Eunjung Alice Lee*, Peter J. Park**, and Christopher A. Walsh**. 2016. “Resolving Rates of Mutation in the Brain Using Single-Neuron Genomics”. Elife 5: e12966.

Publication: Journal Article

Jung, Hyunchul, Donghoon Lee, Jongkeun Lee, Donghyun Park, Yeon Jeong Kim, Woong-Yang Park, Dongwan Hong**, Peter J. Park**, and Eunjung Alice Lee**. 2015. “Intron Retention Is a Widespread Mechanism of Tumor-Suppressor Inactivation”. Nature Genetics 47 (11): 1242-8.

Publication: Journal Article

Evrony, Gilad*, Xuyu* Cai, Eunjung Lee, Benjamin Hills, Princess Elhosary, Hillel Lehmann, Parker, et al. 2012. “Single-Neuron Sequencing Analysis of L1 Retrotransposition and Somatic Mutation in the Human Brain”. Cell 151 (3): 483-96.

Publication: Journal Article

Jung, Hyunchul, Jungkyoon Choi**, and Eunjung Alice Lee**. 2018. “Immune Signatures Correlate With L1 Retrotransposition in Gastrointestinal Cancers”. Genome Research 28 (8): 1136-46.

Publication: Journal Article

Kang, Yeeok, Seong-Hyeuk Nam, Kyung Sun Park, Jong-Won Kim, Eunjung Alice Lee, Jung Min Ko, Kyung-A Lee, and Inho Park. 2018. “DeviCNV: Detection and Visualization of Exon-Level Copy Number Variants in Targeted Next Generation Sequencing Data”. BMC Bioinformatics 19 (381).

Publication: Journal Article

Kim, J., C. Hu, C. Moufawad El Achkar, L. E. Black, J. Douville, A. Larson, M. K. Pendergast, et al. 2019. “Patient-Customized Oligonucleotide Therapy for a Rare Genetic Disease”. N Engl J Med 381: 1644-52.

Publication: Journal Article

Zhang, Yiqun, Lixing Yang, Melanie Kucherlapati, Angela Hadjipanayis, Angeliki Pantazi, Christopher Bristow, Eunjung Alice Lee, et al. 2019. “Global Impact of Somatic Structural Variation on the DNA Methylome of Human Cancers”. Genome Biol 20 (1): 209.

Publication: Journal Article

Chu*, Chong, Boxun Zhao*, Peter Park, and Eunjung Alice Lee. 2020. “Identification and Genotyping of Transposable Element Insertions from Genome Sequencing Data”. Current Protocols in Human Genetics (review) 107(1):e102.