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Conference Papers

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Mitsouras D, Mulkern RV, Afacan O, Brooks D, Rybicki F. K-Space Sample Density Compensation via Basis Function Cross-Correlations, with Application to the Design of 2D RF Excitations. In: Proceedings of the 15th Meeting of the ISMRM; 2007 Mitsouras D, Afacan O, Brooks D, Rybicki F. Tradeoff Analysis...

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Self-supervised denoising diffusion probabilistic models for abdominal DW-MRI.

Publication: Journal Article

Vasylechko, Serge Didenko, Andy Tsai, Onur Afacan, and Sila Kurugol. 2025. “Self-Supervised Denoising Diffusion Probabilistic Models for Abdominal DW-MRI.”. Magnetic Resonance in Medicine 94 (3): 1284-1300.

A closer look: pediatric neuroimaging at 7T.

Publication: Journal Article

Barkovich, Emil Jernstedt, Maria Camila Cortes-Albornoz, Fedel Machado-Rivas, Suely Fazio Ferraciolli, Onur Afacan, and Camilo Jaimes. 2025. “A Closer Look: Pediatric Neuroimaging at 7T.”. Pediatric Radiology 55 (6): 1071-87.

Optimizing T2* imaging for adolescent and young adult patients at 7 T.

Publication: Journal Article

Valencia, Sergio, Fedel Machado-Rivas, Arman Avesta, Emil J Barkovich, Samuel C D Cartmell, Simon K Warfield, Camilo Jaimes, and Onur Afacan. 2025. “Optimizing T2* Imaging for Adolescent and Young Adult Patients at 7 T.”. Pediatric Radiology 55 (6): 1138-47.

A deep learning approach for automatic 3D segmentation of hip cartilage and labrum from direct hip MR arthrography.

Publication: Journal Article

Meier, Malin Kristin, Ramon Andreas Helfenstein, Adam Boschung, Andreas Nanavati, Adrian Ruckli, Till D Lerch, Nicolas Gerber, et al. 2025. “A Deep Learning Approach for Automatic 3D Segmentation of Hip Cartilage and Labrum from Direct Hip MR Arthrography.”. Scientific Reports 15 (1): 4662.

Population Atlas Analysis of Emerging Brain Structural Connections in the Human Fetus.

Publication: Journal Article

Calixto, Camilo, Fedel Machado-Rivas, Davood Karimi, Clemente Velasco-Annis, Maria Camila Cortes-Albornoz, Onur Afacan, Simon K Warfield, Ali Gholipour, and Camilo Jaimes. 2024. “Population Atlas Analysis of Emerging Brain Structural Connections in the Human Fetus.”. Journal of Magnetic Resonance Imaging : JMRI 60 (1): 152-60.

Detailed anatomic segmentations of a fetal brain diffusion tensor imaging atlas between 23 and 30 weeks of gestation.

Publication: Journal Article

Calixto, Camilo, Fedel Machado-Rivas, Davood Karimi, Maria C Cortes-Albornoz, Lina M Acosta-Buitrago, Sebastian Gallo-Bernal, Onur Afacan, Simon K Warfield, Ali Gholipour, and Camilo Jaimes. 2023. “Detailed Anatomic Segmentations of a Fetal Brain Diffusion Tensor Imaging Atlas Between 23 and 30 weeks of Gestation.”. Human Brain Mapping 44 (4): 1593-1602.

Correction to: Prospective pediatric study comparing glomerular filtration rate estimates based on motion-robust dynamic contrast-enhanced magnetic resonance imaging and serum creatinine (eGFR) to 99mTc DTPA.

Publication: Journal Article

Kurugol, Sila, Onur Afacan, Richard S Lee, Catherine M Seager, Michael A Ferguson, Deborah R Stein, Reid C Nichols, et al. 2020. “Correction To: Prospective Pediatric Study Comparing Glomerular Filtration Rate Estimates Based on Motion-Robust Dynamic Contrast-Enhanced Magnetic Resonance Imaging and Serum Creatinine (eGFR) to 99mTc DTPA.”. Pediatric Radiology 50 (5): 755-56.

Motion-robust diffusion compartment imaging using simultaneous multi-slice acquisition.

Publication: Journal Article

Marami, Bahram, Benoit Scherrer, Shadab Khan, Onur Afacan, Sanjay P Prabhu, Mustafa Sahin, Simon K Warfield, and Ali Gholipour. 2019. “Motion-Robust Diffusion Compartment Imaging Using Simultaneous Multi-Slice Acquisition.”. Magnetic Resonance in Medicine 81 (5): 3314-29.