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Retrospective Distortion and Motion Correction for Free-Breathing DW-MRI of the Kidneys Using Dual-Echo EPI and Slice-to-Volume Registration

Publication: Journal Article

Coll-Font, Jaume, Onur Afacan, Scott Hoge, Harsha Garg, Kumar Shashi, Bahram Marami, Ali Gholipour, Jeanne Chow, Simon Warfield, and Sila Kurugol. 2021. “Retrospective Distortion and Motion Correction for Free-Breathing DW-MRI of the Kidneys Using Dual-Echo EPI and Slice-to-Volume Registration”. J Magn Reson Imaging 53 (5): 1432-43.

Improving Automatic Renal Segmentation in Clinically Normal and Abnormal Paediatric DCE-MRI via Contrast Maximisation and Convolutional Networks for Computing Markers of Kidney Function

Publication: Journal Article

Asaturyan, Hykoush, Barbara Villarini, Karen Sarao, Jeanne Chow, Onur Afacan, and Sila Kurugol. 2021. “Improving Automatic Renal Segmentation in Clinically Normal and Abnormal Paediatric DCE-MRI via Contrast Maximisation and Convolutional Networks for Computing Markers of Kidney Function”. Sensors (Basel) 21 (23).

MRI Super-Resolution Through Generative Degradation Learning

Publication: Journal Article

Sui, Yao, Onur Afacan, Ali Gholipour, and Simon Warfield. 2021. “MRI Super-Resolution Through Generative Degradation Learning”. Med Image Comput Comput Assist Interv 12906: 430-40.

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I am an instructor at Harvard Medical School and work in the Computational Radiology Laboratory at Children's Hospital Boston. I received my B.Sc degree from Middle East Technical University, Ankara, Turkey in 2003, M.Sc degree from Bilkent University,Ankara, Turkey in 2006 and PhD degree from...

Unsupervised Transformer Learning for Rapid and High-Quality MRI Data Acquisition.

Publication: Journal Article

Sui, Yao, Onur Afacan, Camilo Jaimes, Ali Gholipour, and Simon K Warfield. 2025. “Unsupervised Transformer Learning for Rapid and High-Quality MRI Data Acquisition.”. Health Data Science 5: 0340.

An MRI Atlas of the Human Fetal Brain: Reference and Segmentation Tools for Fetal Brain MRI Analysis.

Publication: Journal Article

Bagheri, Mahdi, Clemente Velasco-Annis, Jian Wang, Razieh Faghihpirayesh, Shadab Khan, Camilo Calixto, Camilo Jaimes, et al. 2025. “An MRI Atlas of the Human Fetal Brain: Reference and Segmentation Tools for Fetal Brain MRI Analysis.”. ArXiv.

Vendor-agnostic 3D multiparametric relaxometry improves cross-platform reproducibility.

Publication: Journal Article

Fujita, Shohei, Borjan Gagoski, Jon-Fredrik Nielsen, Maxim Zaitsev, Yohan Jun, Jaejin Cho, Xingwang Yong, et al. 2025. “Vendor-Agnostic 3D Multiparametric Relaxometry Improves Cross-Platform Reproducibility.”. Magnetic Resonance in Medicine 94 (3): 937-48.

Regional Changes in the Fetal Telencephalic Wall Diffusion Metrics Across Late Second and Third Trimesters.

Publication: Journal Article

Calixto, Camilo, Maria C Cortes-Albornoz, Clemente Velasco-Annis, Davood Karimi, Onur Afacan, Simon K Warfield, Ali Gholipour, and Camilo Jaimes. 2025. “Regional Changes in the Fetal Telencephalic Wall Diffusion Metrics Across Late Second and Third Trimesters.”. Human Brain Mapping 46 (3): e70159.

Characterizing microstructural development in the fetal brain using diffusion MRI from 23 to 36 weeks of gestation.

Publication: Journal Article

Calixto, Camilo, Fedel Machado-Rivas, Maria C Cortes-Albornoz, Davood Karimi, Clemente Velasco-Annis, Onur Afacan, Simon K Warfield, Ali Gholipour, and Camilo Jaimes. 2024. “Characterizing Microstructural Development in the Fetal Brain Using Diffusion MRI from 23 to 36 weeks of Gestation.”. Cerebral Cortex (New York, N.Y. : 1991) 34 (1).

Moderators, Mediators, and Prognostic Indicators of Treatment With Hip Arthroscopy or Physical Therapy for Femoroacetabular Impingement Syndrome: Secondary Analyses From the Australian FASHIoN Trial.

Publication: Journal Article

Murphy, Nicholas J, Jillian Eyles, Libby Spiers, Emily Davidson, Young Jo Kim, James M Linklater, Onur Afacan, et al. 2023. “Moderators, Mediators, and Prognostic Indicators of Treatment With Hip Arthroscopy or Physical Therapy for Femoroacetabular Impingement Syndrome: Secondary Analyses From the Australian FASHIoN Trial.”. The American Journal of Sports Medicine 51 (1): 141-54.