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Gholipour, Ali, Alireza Akhondi-Asl, Judy Estroff, and Simon Warfield. 2012. “Multi-Atlas Multi-Shape Segmentation of Fetal Brain MRI for Volumetric and Morphometric Analysis of Ventriculomegaly”. NeuroImage 60 (3): 1819–1831.

Commowick, Olivier, Alireza Akhondi-Asl, and Simon Warfield. 2012. “Estimating a Reference Standard Segmentation With Spatially Varying Performance Parameters: Local MAP STAPLE”. IEEE Transactions on Medical Imaging 31 (8): 1593–1606.

Akhondi-Asl, Alireza, and Simon Warfield. 2012. “Estimation of the Prior Distribution of Ground Truth in the STAPLE Algorithm: An Empirical Bayesian Approach”. In International Conference on Medical Image Computing and Computer-Assisted Intervention, 593–600. Springer, Berlin, Heidelberg.

Fernandez, Ivan Sanchez, Alireza Akhondi-Asl, Jacquelyn Klehm, Simon Warfield, Jurriaan Peters, and Tobias Loddenkemper. 2014. “Patients With Electrical Status Epilepticus in Sleep and Normal Magnetic Resonance Imaging Have Smaller Thalamic Volume Than Controls (P7. 332)”. Neurology 82 (10 Supplement): P7–332.

Gorthi, Subrahmanyam, Alireza Akhondi-Asl, Jean-Philippe Thiran, and Simon Warfield. 2014. “Optimal Map Parameters Estimation in Staple-Learning from Performance Parameters versus Image Similarity Information”. In International Workshop on Machine Learning in Medical Imaging, 174–181. Springer, Cham.

Akhondi-Asl, Alireza, Onur Afacan, Robert Mulkern, and Simon Warfield. 2014. “T 2-Relaxometry for Myelin Water Fraction Extraction Using Wald Distribution and Extended Phase Graph”. In International Conference on Medical Image Computing and Computer-Assisted Intervention, 145–152. Springer, Cham.

Gorthi, Subrahmanyam, Alireza Akhondi-Asl, and Simon Warfield. 2015. “Optimal MAP Parameters Estimation in STAPLE Using Local Intensity Similarity Information”. IEEE Journal of Biomedical and Health Informatics 19 (5): 1589–1597.

Asman, Andrew, Alireza Akhondi-Asl, Hongzhi Wang, Nicholas Tustison, Brian Avants, Simon Warfield, and Bennett Landman. 2013. “Miccai 2013 Segmentation Algorithms, Theory and Applications (SATA) Challenge Results Summary”. In MICCAI Challenge Workshop on Segmentation: Algorithms, Theory and Applications (SATA).

Akhondi-Asl, Alireza, Onur Afacan, Mukund Balasubramanian, Robert Mulkern, and Simon Warfield. 2016. “Fast Myelin Water Fraction Estimation Using 2D Multislice CPMG”. Magnetic Resonance in Medicine 76 (4): 1301–1313.

Hesper, Tobias, Evgeny Bulat, Sarah Bixby, Alireza Akhondi-Asl, Onur Afacan, Patricia Miller, Garrett Bowen, Simon Warfield, and Young-Jo Kim. 2017. “Both 3-T DGEMRIC and Acetabular-Femoral T2 Difference May Detect Cartilage Damage at the Chondrolabral Junction”. Clinical Orthopaedics and Related Research® 475 (4): 1058–1065.