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Advances in Image Segmentation publication and kidney segmentation code release

News: November 30, 2021

Improving Automatic Renal Segmentation in Clinically Normal and Abnormal Paediatric DCE-MRI via Contrast Maximisation and Convolutional Networks for Computing Markers of Kidney Function Hykoush Asaturyan, Barbara Villarini, Karen Sarao, Jeanne S. Chow, Onur Afacan, and Sila KurugolAdvances in Image...

Prospective pediatric study comparing glomerular filtration rate estimates based on motion-robust dynamic contrast-enhanced magnetic resonance imaging and serum creatinine (eGFR) to 99m Tc DTPA

Publication: Journal Article

Kurugol, Sila, Onur Afacan, Richard Lee, Catherine Seager, Michael Ferguson, Deborah Stein, Reid Nichols, et al. 2020. “Prospective Pediatric Study Comparing Glomerular Filtration Rate Estimates Based on Motion-Robust Dynamic Contrast-Enhanced Magnetic Resonance Imaging and Serum Creatinine (eGFR) to 99m Tc DTPA”. Pediatric Radiology 50 (5): 698–705.

Bulk motion-compensated DCE-MRI for functional imaging of kidneys in newborns

Publication: Journal Article

Coll-Font, Jaume, Onur Afacan, Jeanne Chow, Richard Lee, Alto Stemmer, Simon Warfield, and Sila Kurugol. 2020. “Bulk Motion-Compensated DCE-MRI for Functional Imaging of Kidneys in Newborns”. Journal of Magnetic Resonance Imaging 52 (1): 207–216.

Free induction decay navigator motion metrics for prediction of diagnostic image quality in pediatric MRI

Publication: Journal Article

Wallace, Tess, Onur Afacan, Camilo Jaimes, Joanne Rispoli, Kristina Pelkola, Monet Dugan, Tobias Kober, and Simon Warfield. 2021. “Free Induction Decay Navigator Motion Metrics for Prediction of Diagnostic Image Quality in Pediatric MRI”. Magnetic Resonance in Medicine 85 (6): 3169–3181.

Linear Time Invariant Model based Motion Compensation for Renal Function Estimation with DCE-MRI (Coll-Font et al.)

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Jaume Coll-Font, Onur Afacan, Jeanne Chow, Richard S. Lee, Simon K. Warfield, and Sila Kurugol Boston Children's Hospital Heavy breathing or large bulk motion of infant during acquisition of renal DCE-MRI causes misalignment between volumes, degrades image quality, and reduces the accuracy of...

News & Events

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ISMRM 2021 Annual Meeting and Exhibition

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Works presented at the ISMRM 2021 annual meeting and exhibition

Deep image prior based DCE-MRI reconstruction for functional imaging of kidneys

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Koçanaoğulları A., Ariyurek C., Afacan O. and Kurugol S. Deep image prior based DCE-MRI reconstruction for functional imaging of kidneys. In Proceedings of ISMRM Workshop on Kidney MRI Biomarkers: The Route to Clinical Adoption 10-12 September 2021 Philadelphia, PA, USA

Open Positions

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Updated 9/15/2025: We are currently looking to add someone to our team! Please see the attached job listing.

Modeling dynamic radial contrast enhanced MRI with linear time invariant systems for motion correction in quantitative assessment of kidney function

Publication: Journal Article

Coll-Font, Jaume, Onur Afacan, Jeanne Chow, Richard Lee, Simon Warfield, and Sila Kurugol. 2021. “Modeling Dynamic Radial Contrast Enhanced MRI With Linear Time Invariant Systems for Motion Correction in Quantitative Assessment of Kidney Function”. Medical Image Analysis 67: 101880.