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Lee*, Eunjung Alice, Han-Yu Chuang*, Jong-Won Kim, Trey Ideker**, and Doheon Lee**. 2008. “Inferring Pathway Activity Toward Precise Disease Classification”. PLoS Comput Biol 4 (11): e1000217.

Kurugol, Sila, Raul San Jose Estepar, James Ross, and George Washko. 2012. “Aorta Segmentation With a 3D Level Set Approach and Quantification of Aortic Calcifications in Non-Contrast Chest CT”. In Engineering in Medicine and Biology Society (EMBC), 2012 Annual International Conference of the IEEE, 2343–2346. IEEE.

Reis, Olson, Tian, Bohn, Brownstein, Park, Cziraky, Wilson, and Mandl. 2012. “A Pharmacoepidemiological Network Model for Drug Safety Surveillance: Statins and Rhabdomyolysis”. Drug Saf 35: 395-406.

Kurugol, S., M. Freiman, J. Goldsmith, R. Didier, O. Afacan, J.M. Perez-Rossello, M.J. Callahan, Bousvaros, and S.K. Warfield. 2017. “Evaluation of Motion-Compensated Spatially-Constrained IVIM (MC-SCIM) Model of Diffusion-Weighted MRI for Assessment of Fibrosis in Crohn’s Disease Using Surgical Histopathology Scores”. In Proc. Intl. Soc. Mag. Reson. Med 2017. http://dev.ismrm.org/2017/1816.html.

Miller, Timothy, Dmitriy Dligach, and Guergana Savova. 2016. “Unsupervised Document Classification With Informed Topic Models”. In Proceedings of the 15th Workshop on Biomedical Natural Language Processing, 83–91. Berlin, Germany: Association for Computational Linguistics.

Lin, Chen, Timothy Miller, Dmitriy Dligach, Steven Bethard, and Guergana Savova. 2016. “Improving Temporal Relation Extraction With Training Instance Augmentation”. In Proceedings of the 15th Workshop on Biomedical Natural Language Processing, 108–113. Berlin, Germany: Association for Computational Linguistics.

Weitzman, E.R., LE Wisk, PK Salimian, KM Magane, Dedeoglu, AO Hersh, Kimura, Mandl, Ringold, and Natter. 2017. “Adding Patient-Reported Outcomes to a Multisite Registry to Quantify Quality of Life and Experiences of Disease and Treatment for Youth With Juvenile Idiopathic Arthritis”. Journal of Patient Reported Outcomes 2 (1).

Akhondi-Asl, Alireza, and Hamid Soltanian-Zadeh. 2009. “Effect of Number of Coupled Structures on the Segmentation of Brain Structures”. Journal of Signal Processing Systems 54 (1): 215–230.

Akhondi-Asl, Alireza, Kourosh Jafari-Khouzani, and Hamid Soltanian-Zadeh. 2010. “Multiple-Atlas-Based Automatic Sementation of Hippocampus for Lateralization in Temporal Lobe Epilepsy”. In Biomedical Imaging: From Nano to Macro, 2010 IEEE International Symposium on, 836–839. IEEE.

Akhondi-Asl, Alireza, Arne Hans, Benoit Scherrer, Jurriaan Peters, and Simon Warfield. 2012. “Whole Brain Group Network Analysis Using Network Bias and Variance Parameters”. In Biomedical Imaging (ISBI), 2012 9th IEEE International Symposium on, 1511–1514. IEEE.