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Resolving rates of mutation in the brain using single-neuron genomics

Publication: Journal Article

Evrony*, Gilad, Eunjung Alice Lee*, Peter J. Park**, and Christopher A. Walsh**. 2016. “Resolving Rates of Mutation in the Brain Using Single-Neuron Genomics”. Elife 5: e12966.

Intron retention is a widespread mechanism of tumor-suppressor inactivation

Publication: Journal Article

Jung, Hyunchul, Donghoon Lee, Jongkeun Lee, Donghyun Park, Yeon Jeong Kim, Woong-Yang Park, Dongwan Hong**, Peter J. Park**, and Eunjung Alice Lee**. 2015. “Intron Retention Is a Widespread Mechanism of Tumor-Suppressor Inactivation”. Nature Genetics 47 (11): 1242-8.

Single-neuron sequencing analysis of L1 retrotransposition and somatic mutation in the human brain

Publication: Journal Article

Evrony, Gilad*, Xuyu* Cai, Eunjung Lee, Benjamin Hills, Princess Elhosary, Hillel Lehmann, Parker, et al. 2012. “Single-Neuron Sequencing Analysis of L1 Retrotransposition and Somatic Mutation in the Human Brain”. Cell 151 (3): 483-96.

Immune signatures correlate with L1 retrotransposition in gastrointestinal cancers

Publication: Journal Article

Jung, Hyunchul, Jungkyoon Choi**, and Eunjung Alice Lee**. 2018. “Immune Signatures Correlate With L1 Retrotransposition in Gastrointestinal Cancers”. Genome Research 28 (8): 1136-46.

Machine Learning and Model Based 3D Segmentation Algorithms for Challenging Medical Imaging Problems

Publication: Thesis

Kurugol, Sila. 2011. “Machine Learning and Model Based 3D Segmentation Algorithms for Challenging Medical Imaging Problems.”

Centerline extraction with principal curve tracing to improve 3D level set esophagus segmentation in CT images

Publication: Conference Paper

Kurugol, Sila, Erhan Bas, Deniz Erdogmus, Jennifer Dy, Gregory Sharp, and Dana Brooks. 2011. “Centerline Extraction With Principal Curve Tracing to Improve 3D Level Set Esophagus Segmentation in CT Images”. In Engineering in Medicine and Biology Society, EMBC, 2011 Annual International Conference of the IEEE, 3403–3406. IEEE.

Emphysema classification based on embedded probabilistic PCA

Publication: Conference Paper

{Zulueta-Coarasa, Teresa, Sila Kurugol, James Ross, George Washko, and Raul San Jose Estepar. 2013. “Emphysema Classification Based on Embedded Probabilistic PCA”. In Engineering in Medicine and Biology Society (EMBC), 2013 35th Annual International Conference of the IEEE, 3969–3972. IEEE.

Reliable estimation of kidney filtration rate with DCE-MRI using motion-robust high spatiotemporal resolution Radial VIBE

Publication: Conference Paper

Kurugol, Sila, Afacan, Deborah Stein, Michael Ferguson, Richard Lee, Reid Nichols, Ravi Seethamraju, Jeanne Chow, and Simon Warfield. 2017. “Reliable Estimation of Kidney Filtration Rate With DCE-MRI Using Motion-Robust High Spatiotemporal Resolution Radial VIBE”. In Proc. Intl. Soc. Mag. Reson. Med.

Motion-Robust Spatially Constrained Parameter Estimation in Renal Diffusion-Weighted MRI by 3D Motion Tracking and Correction of Sequential Slices

Publication: Book Chapter

Kurugol, Sila, Bahram Marami, Onur Afacan, Simon Warfield, and Ali Gholipour. 2017. “Motion-Robust Spatially Constrained Parameter Estimation in Renal Diffusion-Weighted MRI by 3D Motion Tracking and Correction of Sequential Slices”. In Molecular Imaging, Reconstruction and Analysis of Moving Body Organs, and Stroke Imaging and Treatment, 75–85. Springer, Cham.

Jasper Maniates-Selvin

Person: Graduate Student in the Program in Neuroscience

Jasper uses large-volume electron microscopy to reconstruct the neural circuits in adult Drosophila that control the fly's legs. He hopes that this research will ultimately enable roboticists to reverse-engineer the neural circuits that control walking and other complex limb movements. Previously...