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Velasco-Annis, Clemente, Alireza Akhondi-Asl, Aymeric Stamm, and Simon Warfield. 2017. “Reproducibility of Brain MRI Segmentation Algorithms: Empirical Comparison of Local MAP PSTAPLE, FreeSurfer, and FSL-FIRST”. Journal of Neuroimaging.

Akhondi-Asl, Alireza, and Hamid Soltanian-Zadeh. 2009. “Effect of Number of Coupled Structures on the Segmentation of Brain Structures”. Journal of Signal Processing Systems 54 (1): 215–230.

Akhondi-Asl, Alireza, Kourosh Jafari-Khouzani, and Hamid Soltanian-Zadeh. 2010. “Multiple-Atlas-Based Automatic Sementation of Hippocampus for Lateralization in Temporal Lobe Epilepsy”. In Biomedical Imaging: From Nano to Macro, 2010 IEEE International Symposium on, 836–839. IEEE.

Akhondi-Asl, Alireza, Arne Hans, Benoit Scherrer, Jurriaan Peters, and Simon Warfield. 2012. “Whole Brain Group Network Analysis Using Network Bias and Variance Parameters”. In Biomedical Imaging (ISBI), 2012 9th IEEE International Symposium on, 1511–1514. IEEE.

Akhondi-Asl, Alireza, and Warfield. 2013. “Simultaneous Truth and Performance Level Estimation through Fusion of Probabilistic Segmentations”. Medical Imaging, IEEE Transactions on 32 (10): 1840–1852.

LaRovere, Kerri, Frederick Vonberg, Sanjay Prabhu, Kush Kapur, Chellamani Harini, Rogelio Garcia-Jacques, Jessica Chao, Aliresa Akhondi-Asl, Ravi Thiagarajan, and Robert Tasker. 2017. “Patterns of Head Computed Tomography Abnormalities During Pediatric Extracorporeal Membrane Oxygenation and Association With Outcomes”. Pediatric Neurology 73: 64–70.

Akhondi-Asl, Alireza, Frederick Vonberg, Cheuk Au, and Robert Tasker. 2018. “Meaning of Intracranial Pressure-to-Blood Pressure Fisher-Transformed Pearson Correlation-Derived Optimal Cerebral Perfusion Pressure: Testing Empiric Utility in a Mechanistic Model.”. Critical Care Medicine.

Mahmoudi, Seyyed Ehsan, Alireza Akhondi-Asl, Roohollah Rahmani, Shahrooz Faghih-Roohi, Vahid Taimouri, Ahmad Sabouri, and Hamid Soltanian-Zadeh. 2010. “Web-Based Interactive 2D/3D Medical Image Processing and Visualization Software”. Computer Methods and Programs in Biomedicine 98 (2): 172–182.

Akhondi-Asl, Alireza, Kourosh Jafari-Khouzani, Kost Elisevich, and Hamid Soltanian-Zadeh. 2011. “Hippocampal Volumetry for Lateralization of Temporal Lobe Epilepsy: Automated versus Manual Methods”. Neuroimage 54: S218–S226.

Bijari, Payam, Alireza Akhondi-Asl, and Hamid Soltanian-Zadeh. 2010. “Three-Dimensional Coupled-Object Segmentation Using Symmetry and Tissue Type Information”. Computerized Medical Imaging and Graphics 34 (3): 236–249.