Simultaneous geometric--iconic registration
Sotiras, Aristeidis, Yangming Ou, Ben Glocker, Christos Davatzikos, and Nikos Paragios. 2010. “Simultaneous Geometric--Iconic Registration”. Med Image Comput Comput Assist Interv 13 (Pt 2): 676-83.
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Sampling the spatial patterns of cancer: optimized biopsy procedures for estimating prostate cancer volume and Gleason Score
Ou, Yangming, Dinggang Shen, Jianchao Zeng, Leon Sun, Judd Moul, and Christos Davatzikos. 2009. “Sampling the Spatial Patterns of Cancer: Optimized Biopsy Procedures for Estimating Prostate Cancer Volume and Gleason Score”. Med Image Anal 13 (4): 609-20.
Functional Connectivity in Infancy and Toddlerhood Predicts Long-Term Language and Preliteracy Outcomes
Yu, Xi, Silvina Ferradal, Danielle Sliva, Jade Dunstan, Clarisa Carruthers, Joseph Sanfilippo, Jennifer Zuk, et al. 2021. “Functional Connectivity in Infancy and Toddlerhood Predicts Long-Term Language and Preliteracy Outcomes”. Cereb Cortex.
Lifespan Big-Data MRI
Background: Big data is reshaping many aspects of healthcare. Brain MRI studies with over 1000 participants are often considered releative big sample size. Recent Nature, Science, PNAS and other studies used 10,000 or more publicly-shared brain MRIs, or 20,000-50,000 brain MRIs if combining public...
Data Engineer Job (2021)
Open position: We seek an experienced research engineer for brain MRI analysis to join our lab at Boston Children’s Hospital and Harvard Medical School. Title will be compitable with experience, at Data Engineer I, II, III or Computational Biologist. Candidate qualifications: Master’s degree in...
A Collaborative Dictionary Learning Model for Nasopharyngeal Carcinoma Segmentation on Multimodalities MR Sequences
Wang, Haiyan, Guoqiang Han, Haojiang Li, Guihua Tao, Enhong Zhuo, Lizhi Liu, Hongmin Cai, and Yangming Ou. 2020. “A Collaborative Dictionary Learning Model for Nasopharyngeal Carcinoma Segmentation on Multimodalities MR Sequences”. Comput Math Methods Med 2020: 7562140.
Deformable MRI-Ultrasound registration using correlation-based attribute matching for brain shift correction: Accuracy and generality in multi-site data
Machado, Inês, Matthew Toews, Elizabeth George, Prashin Unadkat, Walid Essayed, Jie Luo, Pedro Teodoro, et al. 2019. “Deformable MRI-Ultrasound Registration Using Correlation-Based Attribute Matching for Brain Shift Correction: Accuracy and Generality in Multi-Site Data”. Neuroimage 202: 116094.
RACK1 forms a complex with FGFR1 and PKM2, and stimulates the growth and migration of squamous lung cancer cells
Zhou, Chengzhi, Tao Chen, Zhanhong Xie, Yinyin Qin, Yangming Ou, Jiexia Zhang, Shiyue Li, Rongchang Chen, and Nanshan Zhong. 2017. “RACK1 Forms a Complex With FGFR1 and PKM2, and Stimulates the Growth and Migration of Squamous Lung Cancer Cells”. Mol Carcinog 56 (11): 2391-99.
Using clinically acquired MRI to construct age-specific ADC atlases: Quantifying spatiotemporal ADC changes from birth to 6-year old
Ou, Yangming, Lilla Zöllei, Kallirroi Retzepi, Victor Castro, Sara Bates, Steve Pieper, Katherine Andriole, Shawn Murphy, Randy Gollub, and Patricia Ellen Grant. 2017. “Using Clinically Acquired MRI to Construct Age-Specific ADC Atlases: Quantifying Spatiotemporal ADC Changes from Birth to 6-Year Old”. Hum Brain Mapp 38 (6): 3052-68.
Phase II study of tivozanib, an oral VEGFR inhibitor, in patients with recurrent glioblastoma
Kalpathy-Cramer, Jayashree, Vyshak Chandra, Xiao Da, Yangming Ou, Kyrre Emblem, Alona Muzikansky, Xuezhu Cai, et al. 2017. “Phase II Study of Tivozanib, an Oral VEGFR Inhibitor, in Patients With Recurrent Glioblastoma”. J Neurooncol 131 (3): 603-10.