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Wang, Seunghyun, Mingyun Bae, Jinhao Wang, Boxun Zhao, Khue Nguyen, Shayna Mallett, Jessica A. Switzenberg, et al. Submitted. “Multi-Platform Framework for Mapping Somatic Retrotransposition in Human Tissues”. BioRxiv, Submitted.

Voshall, Adam, Jeongjun Chae, Honglan Li, Junsu Ko, Woongyang Park, Eunjung Alice Lee, and Yoonjoo Choi. Submitted. “STRUMP-I: Structure-Based Machine Learning Approach to PMHC-I Binding Prediction Using Force Field Energy Features”. BioRxiv, Submitted.

Denisko, Danielle, Jeonghyeon Kim, Jayoung Ku, Boxun Zhao, and Eunjung Alice Lee. Forthcoming. “Inverted Alu Repeats in Loop-Out Exon Skipping across Hominoid Evolution”. Nucleic Acids Research, Forthcoming.

Zhou, Zinan, Lovelace J Luquette, Guanlan Dong, Junho Kim, Jayoung Ku, Kisong Kim, Mingyun Bae, et al. Forthcoming. “Recurrent Patterns of Widespread Neuronal Genomic Damage Shared by Major Neurodegenerative Disorders”. Cell, Forthcoming.

Huang, August Yue, Zinan Zhou, Maya Talukdar, Michael B Miller, Brian Chhouk, Liz Enyenihi, Ila Rosen, et al. Forthcoming. “Somatic Cancer Driver Mutations Are Enriched and Associated With Inflammatory States in Alzheimer’s Disease Microglia”. Cell, Forthcoming.

Dong, Guanlan, Chanthia C. Ma, Shulin Mao, Samuel M. Naik, Katherine Sun-Mi Brown, Gannon A. McDonough, Junho Kim, et al. 2025. “Diverse Somatic Genomic Alterations in Single Neurons in Chronic Traumatic Encephalopathy”. Science.

Huang, August Yue, Yuchen Cheng, Jayoung Ku, Boxun Zhao, Dachan Kim, Jaejoon Choi, and Eunjung Alice Lee. 2026. “Accurate Detection of Somatic Single-Nucleotide Variants from Bulk RNA-Seq Data Using RNA-MosaicHunter”. Nucleic Acids Research.