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Side population cells isolated from different tissues share transcriptome signatures and express tissue-specific markers.

Publication: Journal Article

Liadaki, Kho, Sanoudou, Schienda, Flint, AH Beggs, Kohane, and Kunkel. 2005. “Side Population Cells Isolated from Different Tissues Share Transcriptome Signatures and Express Tissue-Specific Markers.”. Exp Cell Res 303 (2): 360-74.

The influence of muscle type and dystrophin deficiency on murine expression profiles.

Publication: Journal Article

Haslett, Judith, Peter Kang, Mei Han, Alvin Kho, Despina Sanoudou, Jay Volinski, Alan Beggs, Isaac Kohane, and Louis Kunkel. 2005. “The Influence of Muscle Type and Dystrophin Deficiency on Murine Expression Profiles.”. Mamm Genome 16 (10): 739-48.

Predicting survival within the lung cancer histopathological hierarchy using a multi-scale genomic model of development.

Publication: Journal Article

Liu, Hongye, Alvin Kho, Isaac Kohane, and Yao Sun. 2006. “Predicting Survival Within the Lung Cancer Histopathological Hierarchy Using a Multi-Scale Genomic Model of Development.”. PLoS Med 3 (7): e232.

Acquisition of granule neuron precursor identity is a critical determinant of progenitor cell competence to form Shh-induced medulloblastoma.

Publication: Journal Article

Schüller, Ulrich, Vivi Heine, Junhao Mao, Alvin Kho, Allison Dillon, Young-Goo Han, Emmanuelle Huillard, et al. 2008. “Acquisition of Granule Neuron Precursor Identity Is a Critical Determinant of Progenitor Cell Competence to Form Shh-Induced Medulloblastoma.”. Cancer Cell 14 (2): 123-34.

Platform dependence of inference on gene-wise and gene-set involvement in human lung development.

Publication: Journal Article

Du, Rose, Kelan Tantisira, Vincent Carey, Soumyaroop Bhattacharya, Stephanie Metje, Alvin Kho, Barbara Klanderman, et al. 2009. “Platform Dependence of Inference on Gene-Wise and Gene-Set Involvement in Human Lung Development.”. BMC Bioinformatics 10: 189.

Expression analysis of asthma candidate genes during human and murine lung development.

Publication: Journal Article

Melén, Erik, Alvin Kho, Sunita Sharma, Roger Gaedigk, Steven Leeder, Thomas Mariani, Vincent Carey, Scott Weiss, and Kelan Tantisira. 2011. “Expression Analysis of Asthma Candidate Genes During Human and Murine Lung Development.”. Respir Res 12: 86.

CHIP TUNER: a web tool for evidence-based noise reduction in gene discovery.

Publication: Journal Article

Tsien, Libermann, Gu, Ho, and Kohane. 2002. “CHIP TUNER: A Web Tool for Evidence-Based Noise Reduction in Gene Discovery.”. Proc AMIA Symp, 810-4.

High abundance synovial fluid proteome: distinct profiles in health and osteoarthritis.

Publication: Journal Article

Gobezie, Reuben, Alvin Kho, Bryan Krastins, David Sarracino, Thomas Thornhill, Michael Chase, Peter Millett, and David Lee. 2007. “High Abundance Synovial Fluid Proteome: Distinct Profiles in Health and Osteoarthritis.”. Arthritis Res Ther 9 (2): R36.

Adjuvant-induced Human Monocyte Secretome Profiles Reveal Adjuvant- and Age-specific Protein Signatures.

Publication: Journal Article

Oh, Djin-Ye, David Dowling, Saima Ahmed, Hyungwon Choi, Spencer Brightman, Ilana Bergelson, Sebastian Berger, et al. 2016. “Adjuvant-Induced Human Monocyte Secretome Profiles Reveal Adjuvant- and Age-Specific Protein Signatures.”. Mol Cell Proteomics 15 (6): 1877-94.

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Research Multi-scale mathematical models of biological systems notably during fetal development. Molecular bases for the pathogenesis, natural history and response to treatment of chronic diseases notably of the respiratory system. Fetal programming. Affiliations Boston Children’s Hospital...