Software

PHet: Heterogeneity-preserving discriminative feature selection for subtype discovery

  • CodeReference
  • Main developers: Abdur Rahman M. A. Basher and Caleb Hallinan

MARS-Net: Deep learning-based segmentation pipeline for profiling cellular morphodynamics from multiple types of live cell microscopy

FNA-Net: Screening adequacy of unstained thyroid fine needle aspiration samples using a deep learning-based classifier

Contour Tracking: Unsupervised contour tracking of live cells

DeepHACKS: Deep phenotyping of subcellular dynamics using deep learning

DeepHACKS

HACKS: Deconvolution of subcellular protrusion heterogeneity  from live cell imaging

hacks

HoloNet: Deep learning-based phenotyping using hologram biomarkers

  • Code in preparation, Reference
  • Main developer: Tzu-Hsi Song
holonet

HoloDiagnosis: Deep transfer learning-based hologram classification for molecular diagnostics

holo

HETEROID: A machine learning pipeline revealing heterogeneous responses to drug perturbations on vascular smooth muscle cell spheroid morphology and formation

heteroid