SantaMaria J, Sadaka, Moussa, Brown, Zhang, Rubin E, Gilmore M, Walker. Compound-gene interaction mapping reveals distinct roles for Staphylococcus aureus teichoic acids. PNAS. 2014;111(34):12510–5.

Mavrici, Marakalala M, Holton J, Prigozhin D, Gee C, Zhang, Rubin E, Alber. Mycobacterium tuberculosis FtsX extracellular domain activates the peptidoglycan hydrolase, RipC. PNAS. 2014;111(22):8037–42.

Pritchard J, Chao M, Abel, Davis B, Baranowski, Zhang, Rubin E, Waldor M. ARTIST: High-resolution genome-wide assessment of fitness using Transposon-insertion sequencing. PLoS Genetics. 2014;10(11):e1004782.

Zhang YJ, Lieberman G. Clinical Decision Making in Tuberculosis: How Radiology Can Help.. Lieberman’s Learning Lab, http://eradiology.bidmc.harvard.edu. 2013.

Ngubane N, Gresh L, Ioerger T, Sacchettini J, Zhang Y, Rubin E, Pym A, Khati. High-throughput sequencing enhanced phage display identifies peptides that bind mycobacteria.. PLoS One. 2013;8(11):e77844.

Zhang Y, Reddy M, Ioerger T, Rothchild A, Dartois V, Schuster B, Trauner A, Wallis D, Galaviz S, Huttenhower C, et al. Tryptophan biosynthesis protects mycobacteria from CD4 T cell-mediated killing. Cell. 2013;155(6):1296–308.

Chao M, Pritchard J, Zhang Y, Rubin E, Livny J, Davis B, Waldor M. High-resolution definition of the Vibrio cholerae essential gene set with hidden Markov model-based analyses of transposon-insertion sequencing data.. Nucleic Acids Research. 2013.

DeJesus M, Zhang Y, Sassetti C, Rubin E, Sacchettini J, Ioerger T. Bayesian analysis of gene essentiality based on sequencing of transposon insertion libraries. Bioinformatics. 2013;29.

Zhang Y, Rubin E. Feast or famine: the host–pathogen battle over amino acids. Cellular Microbiology. 2013.

Zhang Y, Ioerger T, Huttenhower C, Long J, Sassetti C, Sacchettini J, Rubin E. Global Assessment of Genomic Regions Required for Growth in Mycobacterium tuberculosis. PLoS Pathogens. 2012;8.